Salmon Confidential follows renowned biologist Alexandra Morton as she finds that wild salmon are testing positive for dangerous European salmon viruses associated with industrial salmon farming worldwide, and then, how a chain of events is set off by the Canadian government to suppress the findings. Scientists are gagged, research suppressed, evidence not allowed. With the industrial fish farms having moved into Morton's neighbourhood in the late 1980s, since then, there has been a serious decline in wild salmon in the region. So, tracking her findings, the film follows Morton and her team as they move from courtrooms, to Canada's most remote rivers, Vancouver grocery stores and sushi restaurants, providing insights into the workings of government agencies tasked with managing the 'safety of fish and food supply,' that always seem to put industry and the needs of corporations over the natural world, time and time again. Salmon Confidential becomes a call to action to help save the wild salmon from these atrocities, before they're completely wiped out forever.